nest.cpp File Reference

#include "nest.h"
#include <cassert>
#include "exceptions.h"
#include "kernel_manager.h"
#include "mpi_manager_impl.h"
#include "parameter.h"
#include "sp_manager.h"
#include "sp_manager_impl.h"
#include "grid_mask.h"
#include "spatial.h"
#include "connection_manager_impl.h"
#include "genericmodel_impl.h"
#include "model_manager.h"
#include "dictionary.h"

Include dependency graph for nest.cpp:

Namespaces
namespace	nest
	Namespace for the NEST simulation kernel.

Functions
AbstractMask *	nest::create_doughnut (const Dictionary &d)
void	nest::init_nest (int *argc, char **argv[])
void	nest::shutdown_nest (int exitcode)
void	nest::install_module (const std::string &module)
void	nest::reset_kernel ()
void	nest::enable_structural_plasticity ()
void	nest::disable_structural_plasticity ()
void	nest::register_logger_client (const deliver_logging_event_ptr client_callback)
std::string	nest::print_nodes_to_string ()
std::string	nest::pprint_to_string (NodeCollectionPTR nc)
size_t	nest::nc_size (NodeCollectionPTR nc)
void	nest::set_kernel_status (const Dictionary &dict)
Dictionary	nest::get_kernel_status ()
Dictionary	nest::get_nc_status (NodeCollectionPTR nc)
void	nest::set_nc_status (NodeCollectionPTR nc, std::vector< Dictionary > &params)
void	nest::set_connection_status (const std::deque< ConnectionID > &conns, const Dictionary &dict)
void	nest::set_connection_status (const std::deque< ConnectionID > &conns, const std::vector< Dictionary > &dicts)
std::vector< Dictionary >	nest::get_connection_status (const std::deque< ConnectionID > &conns)
void	nest::set_node_status (const size_t node_id, const Dictionary &dict)
Dictionary	nest::get_node_status (const size_t node_id)
Dictionary	nest::get_connection_status (const ConnectionID &conn)
NodeCollectionPTR	nest::slice_nc (const NodeCollectionPTR nc, long start, long stop, long step)
NodeCollectionPTR	nest::create (const std::string &model_name, const size_t n_nodes)
NodeCollectionPTR	nest::create_spatial (const Dictionary &layer_dict)
NodeCollectionPTR	nest::make_nodecollection (const std::vector< size_t > &node_ids)
NodeCollectionPTR	nest::get_nodes (const Dictionary &params, const bool local_only)
bool	nest::equal (const NodeCollectionPTR lhs, const NodeCollectionPTR rhs)
bool	nest::contains (const NodeCollectionPTR nc, const size_t node_id)
long	nest::find (const NodeCollectionPTR nc, size_t node_id)
Dictionary	nest::get_metadata (const NodeCollectionPTR nc)
void	nest::connect (NodeCollectionPTR sources, NodeCollectionPTR targets, const Dictionary &connectivity, const std::vector< Dictionary > &synapse_params)
	Create bipartite connections.
void	nest::disconnect (NodeCollectionPTR sources, NodeCollectionPTR targets, const Dictionary &connectivity, const std::vector< Dictionary > &synapse_params)
	Disconnect nodes.
void	nest::connect_tripartite (NodeCollectionPTR sources, NodeCollectionPTR targets, NodeCollectionPTR third, const Dictionary &connectivity, const Dictionary &third_connectivity, const std::map< std::string, std::vector< Dictionary > > &synapse_specs)
	Create tripartite connections.
void	nest::connect_arrays (const long *sources, const long *targets, const double *weights, const double *delays, const std::vector< std::string > &p_keys, const double *p_values, size_t n, const std::string &syn_model)
	Connect arrays of node IDs one-to-one.
void	nest::connect_sonata (const Dictionary &graph_specs, const long hyperslab_size)
std::deque< ConnectionID >	nest::get_connections (const Dictionary &dict)
void	nest::disconnect (const std::deque< ConnectionID > &conns)
void	nest::simulate (const double t)
void	nest::run (const double time)
void	nest::prepare ()
	do calibrations for network, open files, ... before run()
void	nest::cleanup ()
	do cleanup after a simulation, such as closing files
void	nest::synchronize ()
	Force synchronization of MPI processes.
void	nest::copy_model (const std::string &oldmodname, const std::string &newmodname, const Dictionary &dict)
void	nest::set_model_defaults (const std::string &component, const Dictionary &dict)
Dictionary	nest::get_model_defaults (const std::string &component)
ParameterPTR	nest::create_parameter (const any_type &value)
ParameterPTR	nest::create_parameter (const double value)
ParameterPTR	nest::create_parameter (const long value)
ParameterPTR	nest::create_parameter (const Dictionary &param_dict)
ParameterPTR	nest::create_parameter (const std::string &name, const Dictionary &d)
ParameterFactory &	nest::parameter_factory_ (void)
MaskFactory &	nest::mask_factory_ (void)
double	nest::get_value (const ParameterPTR param)
bool	nest::is_spatial (const ParameterPTR param)
std::vector< double >	nest::apply (const ParameterPTR param, const NodeCollectionPTR nc)
std::vector< double >	nest::apply (const ParameterPTR param, const Dictionary &positions)
NodeCollectionPTR	nest::node_collection_array_index (NodeCollectionPTR nc, const long *array, unsigned long n)
NodeCollectionPTR	nest::node_collection_array_index (NodeCollectionPTR nc, const bool *array, unsigned long n)
std::vector< size_t >	nest::node_collection_to_array (NodeCollectionPTR node_collection, const std::string &selection)
void	nest::message (const VerbosityLevel level, const std::string &function, const std::string &message, const std::string &file, const size_t line)